Test overhaul/upstream branch
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Change the `Performs` in the name of the two tools - `Performs projective transformation with/without labels` - `Performs projective transformation` to `Perform`, which is more consistent with the name of the other tools (imperative form).
* Rename tools Change the `Performs` in the name of the two tools - `Performs projective transformation with/without labels` - `Performs projective transformation` to `Perform`, which is more consistent with the name of the other tools (imperative form). * Update projective_transformation.xml * Update projective_transformation_points.xml * Add CONVENTIONS.md * wip * wip * Update CONVENTIONS.md * Update CONVENTIONS.md * Update CONVENTIONS.md * Update CONVENTIONS.md * Update CONVENTIONS.md * Update CONVENTIONS.md * Remove help section * Update CONVENTIONS.md * Update CONVENTIONS.md * Update CONVENTIONS.md * Update * Update test data * Add content assertions * Update pr.yaml * Update * Update pr.yaml * Add `pip install pillow` * Merge CONVENTIONS.md into CONTRIBUTING.md * Temporarilly fix CI * Update `2d_feature_extraction` tool * Update `2d_auto_threshold` tool * Fix `2d_feature_extraction` tests * Fix test data * Fix tool * Start refactoring `2d_simple_filter` tool * Fix `2d_simple_filter` tool * Add more tests * Fix tests * Update * Fix * Update CONTRIBUTING.md * Fix bugs * Update CONTRIBUTING.md * Update CONTRIBUTING.md * Fix linting issues * Update CONTRIBUTING.md * Refactor tests using macros * Update tests * Update CONTRIBUTING.md * Update CONTRIBUTING.md * Update pr.yaml * Update `anisotropic_diffusion` tool * Fix spelling (was BE, using AE is more consistent) * Update `2d_histogram_equalization` tool * Update `colorize_labels` tool * Update `bf2raw` tool * Add `macros/creators.xml` * Update `rfove` tool * Fix `bioformats2raw` and `voronoi_tessellation` tools * Fix labels * Fix `rfove` tool * Update `overlay_images` tool * Add RGB test for `overlay_images` * Update `overlay_images` help * Add image verification support to CI (BMCV#117) * Update pr.yaml * Update * Update pr.yaml * Add `pip install pillow` * Temporarilly fix CI * Update pr.yaml * Update ci.yaml * Add test tool from `/test/functional/tools/image_diff.xml` * Update pr.yaml * Add .shed.yml * Add missing test files * Switch CI to galaxy fork `kostrykin/galaxy` branch `galaxy-image-analysis` This is a temporary change to enable the features from: - galaxyproject/galaxy#17556 - galaxyproject/galaxy#17581 * Remove `test` tool * Update CONTRIBUTING.md * Update CONTRIBUTING.md * Update CONTRIBUTING.md * Update test data * Add RGB test for `overlay_images` * Update `anisotropic_diffusion` to medpy 0.4.0 * Update PULL_REQUEST_TEMPLATE.md * Update `projective_transformation_points` tool * Update PULL_REQUEST_TEMPLATE.md * Update `bioformats2raw` * Update `projective_transformation` tool * Update `bfconvert` tool (tests failing) * Update CONTRIBUTING.md * Fix `bfconvert` tests * Fix test data size * Update `projective_transformation_points` tool * Remove spurious files * Update requirements using `@TOOL_VERSION@` macro * Update `segmetrics` tool * Remove spurious sym links * Update `superdsm` tool * Update `scale_image` tool (not finished yet) * Fix tests * Fix `scale_image` tool * Refactor * Fix linting issues * Update tests and help of `2d_simple_filter` tool * Update `scale_image` help * Update CI to use latest version of `galaxy` fork * Fix tests for float TIFF in `scale_image` tool * Add tifffile to CI workflows * Fix tests of `bfconvert` tool * Update `2d_filter_segmentation_by_features` tool * Update `image_math` tool * Update `orientationpy` tool * Update `morphological_operations` tool * Update `split_labelmap` tool * Add float TIFF test for `2d_simple_filter` * Update `slice_image` tool * Add missing macros * Update help of `2d_filter_segmentation_by_features` tool * Update `concat_images` tool * Fix linting issues * Fix file sizes * Fix missing `profile`
kostrykin
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