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* v1.1.0 rc
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* changed computation of bpcov to account for all alignments (any strand)
* new -A option for gene abundance reporting as a tab delimited file
* TPM calculation and reporting
* printResults() now called even for regions with no assemblies due to
 updates of the sum of all coverages needed for TPM calculation
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@gpertea
gpertea committed Oct 17, 2015
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