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preparing v1.0.5, big memory usage improvements:
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- changed GVec<bool> to GBitVec
- collapse reads with same start and same CIGAR string
- changed GBitVec pattern for transfrags to use O(V+E) memory instead of
  O(V+V(V+1)/2)
- changed the threshold for accepting a spliced read s.t. the spliced read
  has to be more than isofrac/100 from the overall coverage at each junction,
  and the drop in coverage to be more than isofrac at each junction
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@gpertea
gpertea committed Sep 29, 2015
1 parent cf4ab4e commit 8f0fddb
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