Update config.yaml

[wlason]

This is how I would suggest to update the slurm config.yaml

It adds a sensible default number of threads for HPC and fixes the small typo in specifying the cluster command.

It also creates logs which are prefixed with rule name (similarly to what snakemake would do if you run it with --slurm instead of specifying --profile slurm - if you do that, it would natively save to slurm_logs/rule_{rule}/%j.log in .snakemake directory), which are easier to read in case of errors - it allowed me to work out which rule needed more memory, for example.

[quentinblampey]

Thanks @wlason, this looks good to me!
I'm currently out-of-office, I'll check that it also work on our clusters as an additional check, and then merge it 👍

[quentinblampey]

Minor comment: this might be something that doesn't fit well for all users (mostly the "time" line). I think this is something that the user should add if needed. Or maybe this can be added as a comment, and any user can remove the comment if needed.
WDYT?

[quentinblampey]

Hello @wlason, sorry for the delay, I had unexpected deadlines.
Could you please update your PR as asked in the comment above? (basically, keeping the changes until line 11 included).
Then I'll merge it :)