Code

Dev#128

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quentinblampey merged 19 commits intomastergustaveroussy/sopa:masterfrom devgustaveroussy/sopa:devCopy head branch name to clipboardSep 25, 2024

+84-59

Commits

Commits on Sep 20, 2024

• bins aggr + auto_save_on_disk settings

  quentinblampey

  committed
  75b9c0c

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Commits on Sep 23, 2024

• added experiment parallelization backend with dask

  quentinblampey

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  341eb2c

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• added Visium HD tutorial

  quentinblampey

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Commits on Sep 24, 2024

• Fix compatibility with latest version of Baysor

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  lguerard

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  575bfdb

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• Fix issue with WindowPath and glob

  lguerard

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  69f048e

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• add progress bar to dask parallel in settings

  quentinblampey

  committed
  27688d7

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• move functions from the API (new API in progress)

  quentinblampey

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  7a25e8a

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• API refactor in progress (2)

  quentinblampey

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  067c958

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• Revert last commit and update API documentation

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  lguerard

  committed
  b05e3ce

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• fix typo + add sopa.segmentation.cellpose full seg

  quentinblampey

  committed
  bfd79e1

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• aggregation cleanup + tissue segmentation in CLI

  quentinblampey

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  00e2267

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• Fix parsing of Cell number from loom file

  lguerard

  committed
  938b7db

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• support both macsima versions

  quentinblampey

  committed
  ad58d6a

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Commits on Sep 25, 2024

• Revert to v1.1.5

  quentinblampey

  committed
  8c6c59d

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• macsima reader: support both format types

  quentinblampey

  committed
  7feb2d3

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• Merge branch 'dev' of https://github.com/lguerard/sopa into lguerard-dev

  quentinblampey

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  9b58d3d

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• check whether the cell ids are string or int

  quentinblampey

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  ba537a3

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• Merge pull request #127 from gustaveroussy/lguerard-dev

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  quentinblampey

  authored
  02cf901

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• Support baysor>=0.7.0 (#125)

  quentinblampey

  committed
  ff9ff66

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