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24 Open 3 Closed
24 Open 3 Closed
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Issues list

Gene enrichment analysis?
#30 opened Jan 11, 2025 by emilylasse
Error when calculating GSVA based on UCell method
#28 opened Aug 14, 2024 by YuxinYin0906
3
Heatmap issues input is not a matrix, it should be a simple vector
#27 opened Jun 28, 2024 by adc123456
1
'ssgseaParam' is not an exported object from 'namespace:GSVA'
#26 opened Jun 13, 2024 by FLY-Fiancee
5
Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE.
#24 opened May 6, 2024 by guokai8
numbers of columns of arguments do not match
#23 opened Feb 29, 2024 by jiangbonong
6
no slot of name "counts" for this object of class "Assay5"
#22 opened Jan 25, 2024 by andreyurch
4
Discrepancy in results from v0.0.16 to 0.0.17
#21 opened Dec 1, 2023 by DCarbonez
1
'group' column in scgsva result@obj
#20 opened Nov 22, 2023 by MingchenInSZ
1
Cannot locate raw NES
#19 opened Nov 16, 2023 by sierranishizaki
1
GSVA calculation takes extremely long
#18 opened Oct 25, 2023 by jonrot1906
7
MSIGB annotation
#17 opened Oct 4, 2023 by guokai8
About spatial transcriptomes
#16 opened Sep 28, 2023 by orange-3711
3
input<- input[tabulate(summary(input)$i) != 0, , drop = FALSE]
#15 opened Jul 20, 2023 by yanwuanxin
gsva输出结果在转换成数据框时 加上“check.names=FALSE”
#14 opened Jul 20, 2023 by yanwuanxin
1
Memory issue
#12 opened May 12, 2023 by Cristinacondel1
2
Input issue
#11 opened Apr 13, 2023 by enBiter
2
buildAnnot error:Error in curl::curl_fetch_memory(url, handle = handle) : SSL certificate problem: certificate has expired
#10 opened Apr 1, 2023 by Tycooner
1
Error after running parallel on HPC
#7 opened Dec 18, 2022 by saeedfc
1
Use a custom gene set?
#6 opened Nov 9, 2022 by heinin
6
Possible to integrate other pathway data bases such as Reactome, Wiki?
#5 opened May 2, 2022 by charlesgwellem
1
heatmap shows all pathway but can not select average top upregulated or down regulated pathway
#4 opened Apr 8, 2022 by henrywu0228
1
Error in hclust(d, method = method) : size cannot be NA no
#3 opened Oct 9, 2021 by zznx
2
at file ../Core/cholmod_dense.c, line 102
#2 opened Oct 6, 2021 by zznx
4
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