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v1.8.2

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@epi2melabs-bot epi2melabs-bot released this 04 Oct 18:50
· 360 commits to master since this release

Added

  • The SNP workflow will filter the final VCF to only return calls in the regions specified with --bed
    • Avoid clair3 calling variants in regions that flank those specified in the BED

Fixed

  • SNP subworkflow was ignoring BED file and analysing all regions
  • Report SV crashing when generating the size plots with only large indels
  • Downsampling not working when targeting regions with --bed
  • --phase_mod not emitting the haplotagged bam files
  • Report crashing when loading a clinvar-annotated VCF file with multiple GENEINFO/CLNVC entries

Removed

  • Default local executor CPU and RAM limits