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Merge branch 'remove-limits' into 'dev'
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remove-local-limits

See merge request epi2melabs/workflows/wf-human-variation!154
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SamStudio8 committed Oct 4, 2023
2 parents b98d4dd + a7e349c commit 934be8e
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4 changes: 3 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -4,7 +4,7 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [unreleased]
## [v1.8.2]
### Added
- The SNP workflow will filter the final VCF to only return calls in the regions specified with `--bed`
- Avoid clair3 calling variants in regions that flank those specified in the BED
Expand All @@ -14,6 +14,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Downsampling not working when targeting regions with `--bed`
- `--phase_mod` not emitting the haplotagged bam files
- Report crashing when loading a clinvar-annotated VCF file with multiple `GENEINFO`/`CLNVC` entries
### Removed
- Default local executor CPU and RAM limits

## [v1.8.1]
### Fixed
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9 changes: 1 addition & 8 deletions nextflow.config
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Expand Up @@ -162,21 +162,14 @@ manifest {
description = 'Basecalling, SNV calling, SV calling, modified base calling, CNV calling, and STR genotyping of human samples.'
mainScript = 'main.nf'
nextflowVersion = '>=23.04.2'
version = '1.8.1'
version = '1.8.2'
}

epi2melabs {
tags = "human,variant calling,whole genome,basecalling"
icon = "faIdCard"
}

executor {
$local {
cpus = 16
memory = "16 GB"
}
}

// used by default for "standard" (docker) and singularity profiles,
// other profiles may override.
process {
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