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{bio}[system/system] CellRanger v9.0.0 #21934

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Nov 29, 2024
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{bio}[system/system] CellRanger v9.0.0 #21934

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31 changes: 31 additions & 0 deletions easybuild/easyconfigs/c/CellRanger/CellRanger-9.0.0.eb
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# The STAR binary included in this version has been vectorized with AVX
# hence it is not recommended for systems that do not support it.

easyblock = 'Tarball'

name = 'CellRanger'
version = '9.0.0'

homepage = 'https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger'
description = """Cell Ranger is a set of analysis pipelines that process Chromium
single-cell RNA-seq output to align reads, generate gene-cell matrices and perform
clustering and gene expression analysis."""

toolchain = SYSTEM

download_instructions = """
Download manually from https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest
"""
sources = [SOURCELOWER_TAR_GZ]
checksums = ['d57e574630bc0871299ba0e3e3b9a770b572cd35a819c52bfd58403ccd72035d']

keepsymlinks = True

sanity_check_paths = {
'files': ['bin/cellranger'],
'dirs': ['bin/rna', 'bin/tenkit'],
}

sanity_check_commands = ['cellranger testrun --id=tiny']

moduleclass = 'bio'
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