Code

Improve model definition ui#29

Code

Merged

teddygroves merged 28 commits intomaindtu-qmcm/enzax:mainfrom usable_uidtu-qmcm/enzax:usable_uiCopy head branch name to clipboardDec 13, 2024

+1,202-1,348

Commits

Commits on Nov 27, 2024

• WIP better ui

  teddygroves

  committed
  c8ddebd

• allostery, tests (not passing!)

  teddygroves

  committed
  c14a469

• tidying

  teddygroves

  committed
  90e79ab

• Fix missing jnp.log in test

  teddygroves

  committed
  259961e

• More fixes - now the rate equations test passes!

  teddygroves

  committed
  33dbc3d

Commits on Nov 28, 2024

• Updating linear example

  teddygroves

  committed
  952a909

• Fix incorrect dgf in linear model

  teddygroves

  committed
  3f3937e

• trying to get methionine to work

  teddygroves

  committed
  2334e1c

• Fix incorrect kms in methionine model

  teddygroves

  committed
  34cc521

• flatten species indexes

  teddygroves

  committed
  70395e7

• Fix methionine kis

  teddygroves

  committed
  31a0cdc

• Update gradient test

  teddygroves

  committed
  a201922

• fix gradient test

  teddygroves

  committed
  cccb879

• delete unused files, tidy grad test

  teddygroves

  committed
  b9736e6

• Update gh action to use uv

  teddygroves

  committed
  97e5e7b

• Update grad test to be approximate

  teddygroves

  committed
  6b8b627

Commits on Nov 29, 2024

• get mcmc demo to work

  teddygroves

  committed
  0da0dd3

• get steady state demo to work

  teddygroves

  committed
  a0e8c46

• update readme

  teddygroves

  committed
  c3dffff

• Merge branch 'main' into usable_ui

  teddygroves

  committed
  12b4dac

• update getting started docs

  teddygroves

  committed
  841ae08

• Fix typo in python example

  teddygroves

  committed
  296befa

Commits on Dec 11, 2024

• define rate equation models using reaction ids

  teddygroves

  committed
  62884a1

• Fix sbml model errors

  teddygroves

  committed
  fc15ee6

• Remove use of deprecated KeyArray

  teddygroves

  committed
  01cd8ce

• Update KineticModelSbml

  Show description for e406db3
  AlberteSloth

  authored
  e406db3

Commits on Dec 13, 2024

• Updated sbml_demo

  AlberteSloth

  committed
  5495772

• fix pre-commit

  teddygroves

  committed
  0214412