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MaximilianHoffmann committed Oct 19, 2023
1 parent 452b050 commit 00444da
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2 changes: 1 addition & 1 deletion notebooks/generate_figures.ipynb
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Expand Up @@ -57,7 +57,7 @@
"!mamba install -q -y -c rapidsai pylibraft\n",
"!git clone https://github.com/danionella/hoffmann_et_al_2023.git\n",
"!pip install --ignore-installed --quiet ./hoffmann_et_al_2023\n",
"!wget \"https://owncloud-ext.charite.de/owncloud/index.php/s/H97Qi8haRYLZu4e/download\" -O data.h5"
"!wget \"https://gin.g-node.org/danionella/Hoffmann_et_al_2023/raw/5a3146dc108208415f87bf17ebce37d566b28208/20230611_export_3.h5\" -O data.h5"
]
},
{
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2 changes: 1 addition & 1 deletion readme.md
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Expand Up @@ -19,7 +19,7 @@ Using [mamba](https://github.com/conda-forge/miniforge#mambaforge) (or conda) as
mamba install -q -y -c rapidsai -c conda-forge -c nvidia cucim cuml cupy
git clone https://github.com/danionella/hoffmann_et_al_2023.git
pip install --ignore-installed --quiet ./hoffmann_et_al_2023
wget "http://gin.g-node.org/danionella/Hoffmann_et_al_2023/raw/master/20230611_export_3.h5" -O data.h5
wget "https://gin.g-node.org/danionella/Hoffmann_et_al_2023/raw/5a3146dc108208415f87bf17ebce37d566b28208/20230611_export_3.h5" -O data.h5
```
Hardware requirements:
For Figure 3: GPU with memory >= 32 GB
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