Version 2.0

bm2-lab · Aug 4, 2020 · c09bcd4 · c09bcd4
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diff --git a/README.md b/README.md
@@ -22,13 +22,11 @@ pTuneos currently test on x86_64 on ubuntu 16.04.
 * [Variant Effect Predictor (VEP)](https://github.com/Ensembl/ensembl-vep)
 * [BWA](https://github.com/lh3/bwa)
 * [samtools](https://github.com/samtools)
-* [strelka](https://github.com/Illumina/strelka)
 * [Optitype](https://github.com/FRED-2/OptiType)
 * [Pyclone](https://bitbucket.org/aroth85/pyclone/wiki/Tutorial)
 * [GATK 3.8](https://software.broadinstitute.org/gatk/best-practices/)
 * [Picard tools](https://broadinstitute.github.io/picard/)
 * [Java 8](https://java.com/en/download/help/linux_x64rpm_install.xml)
-* [Varscan2](http://varscan.sourceforge.net/)
 * [kallisto](http://pachterlab.github.io/kallisto/)
 * [trimmomatic](http://www.usadellab.org/cms/?page=trimmomatic)
 * [vcftools](http://vcftools.sourceforge.net/)

diff --git a/bin/deletion2fasta.py b/bin/deletion2fasta.py