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29 Open 23 Closed
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Issues list

Most SV types missing from genotyped vcf
#139 opened Dec 6, 2024 by afurches
IOError: [Errno 9] Bad file descriptor
#138 opened Nov 18, 2022 by JiaB-He
ValueError: dictionary update sequence element #0 has length 1; 2 is required
#137 opened Feb 16, 2022 by gsilvaarias
KeyError: 'Assuming'
#136 opened Jan 25, 2022 by Qijie0615
region overlapped between duplication and deletion
#135 opened Dec 19, 2021 by weikai-320722
some problems about assembly using parameter --spades
#133 opened May 20, 2020 by hzjsxu
Pip installation error
#132 opened Mar 11, 2020 by moldach
3
output vcf information
#131 opened Dec 4, 2019 by weikai320722
output files filtering
#129 opened Oct 17, 2019 by weikai320722
2
filter_gaps
#128 opened Jun 6, 2019 by Pastellem
1
Error: reference file is not indexed
#127 opened Oct 18, 2018 by fabfabBesnard
type 'exceptions.IOError': Broken pipe
#126 opened Jul 9, 2018 by songtaogui
2
IOError: [Errno 2] No such file or directory: 'cnvnator.call'
#125 opened Feb 1, 2018 by colinhercus
3
Memory error when using metasv bug
#124 opened Oct 17, 2017 by daxian248
@msahraeian
9
Error while reading AGE output
#123 opened Oct 2, 2017 by jasjitbanwait
3
Merged calls (without assembly) have only homozygous ALT genotype and inheritance analysis.
#122 opened Aug 17, 2017 by npatel22526
Questions on genotyping
#121 opened Jul 21, 2017 by ldorozco
Run could not finish for DUP variant with option "--svs_to_assemble --svs_to_softclip" on
#118 opened Feb 16, 2017 by justin-mbca
Deletion assembly and soft clip
#117 opened Jan 17, 2017 by Madelinehazel
15
Lumpy translocations ignored by metaSV
#115 opened Oct 28, 2016 by Madelinehazel
5
Insertion detection
#111 opened Jun 24, 2016 by Madelinehazel
3
How to include SV calls from Delly
#110 opened May 19, 2016 by MMesbahU
9
Permissions errors during run_spades_single in run_spades.py bug
#108 opened Apr 7, 2016 by aktilot
@marghoob
5
Object has no attribute 'length' in the last step, Output final VCF file
#105 opened Feb 28, 2016 by wjaratlerdsiri
9
OSError: [Errno 12] Cannot allocate memory
#103 opened Feb 23, 2016 by Madelinehazel
6
ProTip! What’s not been updated in a month: updated:<2024-11-22.