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output files filtering #129

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weikai320722 opened this issue Oct 17, 2019 · 2 comments
Open

output files filtering #129

weikai320722 opened this issue Oct 17, 2019 · 2 comments

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@weikai320722
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Hi there,

I have got some vcf files by metasv to merge different tools and assembly. But I don't know how to extract high confidence SNVs from outputs ? could you give me some ideas?

thanks a lot.

Kai
@marghoob
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@weikai320722 , the high-quality SVs would have PASS in the FILTER column in the VCF.

@weikai320722
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But I also find flag of "IMPRECISE" in PASS SVs. So, what IMPRECISE mean?

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@marghoob @weikai320722