Merge pull request #20 from osagiei/patch-1

Add check.names=FALSE in CIRI_DE.R
bioinfo-biols · Feb 25, 2021 · b39ac61 · b39ac61
2 parents 2e61909 + 6df8234
commit b39ac61
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/libs/CIRI_DE.R b/libs/CIRI_DE.R
@@ -31,9 +31,9 @@ if (is.na(opt$lib) || is.na(opt$bsj) || is.na(opt$gene) || is.na(opt$out)) {
 
 # Load data
 lib_mtx <- read.csv(opt$lib, row.names = 1)
-gene_mtx <- read.csv(opt$gene, row.names = 1)
+gene_mtx <- read.csv(opt$gene, row.names = 1, check.names=FALSE)
 gene_mtx <- gene_mtx[,rownames(lib_mtx)]
-bsj_mtx <- read.csv(opt$bsj, row.names = 1)
+bsj_mtx <- read.csv(opt$bsj, row.names = 1, check.names=FALSE)
 
 gene_DGE <- DGEList(counts = gene_mtx, group = lib_mtx$Group)
 gene_idx <- filterByExpr(gene_DGE)