CIRIquant

CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data

Documentation

Documentation is available online at https://ciri-cookbook.readthedocs.io/en/latest/

Author

Authors: Jinyang Zhang([email protected]), Fangqing Zhao([email protected])

Maintainer: Jinyang Zhang

Release Notes

• Version 1.1: Added support for stranded library and GFF3 format input.
• Version 1.0: The first released version of CIRIquant.

License

The code is released under the MIT License. See the LICENSE file for more detail.

Citing CIRIquant

• Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) doi:10.1038/s41467-019-13840-9