Update combiner.py

bigbio · Sep 7, 2023 · cbd26e9 · cbd26e9
1 parent 954ddec
commit cbd26e9
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/ibaq/combiner.py b/ibaq/combiner.py
@@ -62,7 +62,7 @@ def imputer(self, covariate_to_keep: list = None):
 
         # Keep only rows within covariate_to_keep, you can keep tissue or tissue part you want.
         if covariate_to_keep:
-            self.df = self.df[self.df[self.covariate].isin(groups_to_keep)]
+            self.df = self.df[self.df[self.covariate].isin(covariate_to_keep)]
 
         # keep columns with at least 30% of non-missing values in each covariate_index group
         self.df = filter_missing_value_by_group(self.df,