change to retrieve the protein accession instead of protein names.

bigbio · Aug 14, 2023 · 6d2da52 · 6d2da52
1 parent 2432672
commit 6d2da52
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/ibaq/ibaqpy_commons.py b/ibaq/ibaqpy_commons.py
@@ -254,15 +254,15 @@ def get_mbr_hit(scan: str):
 def parse_uniprot_accession(uniprot_id: str) -> str:
     """
     Parse the uniprot accession from the uniprot id in the form of
-    tr|CONTAMINANT_Q3SX28|CONTAMINANT_TPM2_BOVIN and convert to CONTAMINANT_TPM2_BOVIN
+    tr|CONTAMINANT_Q3SX28|CONTAMINANT_TPM2_BOVIN and convert to CONTAMINANT_Q3SX28
     :param uniprot_id: uniprot id
     :return: uniprot accession
     """
     uniprot_list = uniprot_id.split(";")
     result_uniprot_list = []
     for accession in uniprot_list:
         if accession.count("|") == 2:
-            accession = accession.split("|")[2]
+            accession = accession.split("|")[1]
         result_uniprot_list.append(accession)
     return ";".join(result_uniprot_list)