first refactoring of the commandline

bigbio · May 30, 2024 · 2149153 · 2149153
1 parent 3d2cf49
commit 2149153
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
@@ -45,4 +45,6 @@ jobs:
         ibaqpy --help
     - name: Test commandline normalization features
       run: |
+        rm -rfv tests/PXD003947/PXD003947-peptides-norm.csv
+        rm -rfv tests/PXD003947/PXD003947-peptides-norm.parquet
         ibaqpy features2peptides --parquet tests/PXD003947/PXD003947-feature.parquet --sdrf tests/PXD003947/PXD003947.sdrf.tsv --min_aa 7 --min_unique 2 --remove_ids data/contaminants_ids.tsv --remove_decoy_contaminants --remove_low_frequency_peptides --output tests/PXD003947/PXD003947-peptides-norm.csv --skip_normalization --nmethod median --pnmethod max_min --log2 --save_parquet