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48 Open 47 Closed
48 Open 47 Closed
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Issues list

ERROR: command failed
#189 opened Apr 28, 2023 by chenbiaobang
SeqMule installation
#188 opened Nov 16, 2022 by slma2021
5
Run example fastq files with error bug
#187 opened May 4, 2022 by DecodeGenome
6
No variant calling after alignment bug
#186 opened May 4, 2022 by DecodeGenome
variantFiltration error
#182 opened Aug 30, 2020 by elbakrifz
5
ava.lang.IllegalArgumentException: Inconsistent number of provided filter names and expressions: names=[] exps=[AB < 0.2 || MQ0 > 50]
#181 opened Aug 26, 2020 by elbakrifz
1
error in step 7 with GenomeAnalysisTKLite.jar
#180 opened Mar 10, 2020 by yeroslaviz
1
extracting database *.vcf.idx file problem
#175 opened Jul 17, 2019 by am987
1
java.lang.IllegalArgumentException:#gatk#variantcalling
#174 opened Sep 26, 2018 by ashaneev
1
realtime genomics (RTG)
#172 opened May 25, 2018 by splaisan
1
several tools do not get installed (ubuntu with all dependencies)
#171 opened May 24, 2018 by splaisan
5
Why multiple aligners are used here?
#170 opened Mar 9, 2018 by vivekruhela
1
issues about gatk when running SeqMule
#169 opened Feb 15, 2018 by gangcai
4
Issue with GATK 4.0
#168 opened Feb 9, 2018 by gangcai
1
final bam files
#163 opened Sep 14, 2017 by mikebaravo
Eror combining vcf files bug
#162 opened Sep 7, 2017 by assafgrw
@yunfeiguo
8
file to install g++
#161 opened Aug 29, 2017 by assafgrw
3
bwamem alignment error: missing header?
#159 opened May 8, 2017 by jmaggi
8
Failed to extract primary alignments.
#157 opened Apr 22, 2017 by anchizhang
@yunfeiguo
8
In dev.off() : No TIFF support in this version of R
#156 opened Apr 20, 2017 by anchizhang
5
It would be nice to add allowance for fastq files in zip formats other than gzip.
#155 opened Dec 7, 2016 by anchizhang
somatic mutation calling for multiple runs
#154 opened Nov 22, 2016 by miccec
4
Extracting consensus calls and VCFv4.2 malformed headers
#148 opened Aug 23, 2016 by ghost
2
Default target region bed file in test run
#146 opened Aug 9, 2016 by rashidma
28
fix coverage calculation issue
#140 opened May 21, 2016 by yunfeiguo
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