Remove unused dependencies

requirements/dev-requirements.in

@@ -1,10 +1,10 @@
 -c requirements.txt
 -c test-requirements.txt
 
-Werkzeug # https://github.com/pallets/werkzeug
+# Interactive debugging.
 ipdb  # https://github.com/gotcha/ipdb
 
-# Testing
+# Type checking
 # ------------------------------------------------------------------------------
 mypy  # https://github.com/python/mypy
 django-stubs  # https://github.com/typeddjango/django-stubs
@@ -23,11 +23,8 @@ black  # https://github.com/psf/black
 pylint-django  # https://github.com/PyCQA/pylint-django
 pre-commit  # https://github.com/pre-commit/pre-commit
 
-# Security
-# ------------------------------------------------------------------------------
-safety  # https://github.com/pyupio/safety
-setuptools # https://github.com/pypa/setuptools
-
 # Django
 # ------------------------------------------------------------------------------
 django-debug-toolbar  # https://github.com/jazzband/django-debug-toolbar
+
+Werkzeug # https://github.com/pallets/werkzeug

requirements/dev-requirements.txt

@@ -42,7 +42,6 @@ click==8.1.3
     # via
     #   -c requirements/requirements.txt
     #   black
-    #   safety
 colorama==0.4.6
     # via sphinx-autobuild
 decorator==5.1.1
@@ -67,8 +66,6 @@ django-stubs-ext==4.2.5
     # via django-stubs
 docutils==0.20.1
     # via sphinx
-dparse==0.6.3
-    # via safety
 executing==2.0.1
     # via stack-data
 filelock==3.13.1
@@ -128,8 +125,6 @@ packaging==21.3
     # via
     #   -c requirements/requirements.txt
     #   -c requirements/test-requirements.txt
-    #   dparse
-    #   safety
     #   sphinx
 parso==0.8.3
     # via jedi
@@ -178,19 +173,14 @@ pytz==2023.3.post1
     #   -c requirements/requirements.txt
     #   babel
 pyyaml==6.0.1
-    # via pre-commit
+    # via
+    #   -c requirements/test-requirements.txt
+    #   pre-commit
 requests==2.31.0
     # via
     #   -c requirements/requirements.txt
     #   -c requirements/test-requirements.txt
-    #   safety
     #   sphinx
-ruamel-yaml==0.18.5
-    # via safety
-ruamel-yaml-clib==0.2.8
-    # via ruamel-yaml
-safety==2.3.5
-    # via -r requirements/dev-requirements.in
 six==1.16.0
     # via
     #   -c requirements/requirements.txt
@@ -230,7 +220,6 @@ tomli==2.0.1
     #   -c requirements/test-requirements.txt
     #   black
     #   django-stubs
-    #   dparse
     #   ipdb
     #   mypy
     #   pylint

requirements/requirements.in

@@ -1,25 +1,26 @@
 # For dependency management
 pip-tools
 
-pytz  # https://github.com/stub42/pytz
-python-slugify  # https://github.com/un33k/python-slugify
-Pillow  # https://github.com/python-pillow/Pillow
-argon2-cffi  # https://github.com/hynek/argon2_cffi
+# Middleware for whitenoise/static files.
 whitenoise  # https://github.com/evansd/whitenoise
-redis  # https://github.com/andymccurdy/redis-py
-hiredis  # https://github.com/redis/hiredis-py
 oauthlib  # https://github.com/oauthlib/oauthlib
 
 # Django
 # ------------------------------------------------------------------------------
 django>=4.2,<5.0  # https://www.djangoproject.com/
+# Read from .env files
 django-environ  # https://github.com/joke2k/django-environ
+# Turn on and off maintenance mode.
 django-maintenance-mode # https://github.com/fabiocaccamo/django-maintenance-mode
+# Model utilities
 django-model-utils  # https://github.com/jazzband/django-model-utils
+# login/auth using Drupal or other SocialApplications.
 django-allauth  # https://github.com/pennersr/django-allauth
+# Nicer forms.
 django-crispy-forms  # https://github.com/django-crispy-forms/django-crispy-forms
-django-redis  # https://github.com/jazzband/django-redis
+# Protect all views behind LoginRequired by default.
 django-login-required-middleware # https://github.com/CleitonDeLima/django-login-required-middleware
+# Back up the database before migrations/updates.
 django-dbbackup # https://github.com/jazzband/django-dbbackup
 # For time stamped models.
 django-extensions  # https://github.com/django-extensions/django-extensions

requirements/requirements.txt

@@ -4,14 +4,8 @@
 #
 #    pip-compile requirements/requirements.in
 #
-argon2-cffi==23.1.0
-    # via -r requirements.in
-argon2-cffi-bindings==21.2.0
-    # via argon2-cffi
 asgiref==3.7.2
     # via django
-async-timeout==4.0.2
-    # via redis
 attrs==22.1.0
     # via jsonschema
 backports-zoneinfo==0.2.1
@@ -22,12 +16,10 @@ cachetools==5.2.0
     # via google-auth
 certifi==2023.11.17
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   requests
 cffi==1.15.0
-    # via
-    #   argon2-cffi-bindings
-    #   cryptography
+    # via cryptography
 chardet==5.1.0
     # via pronto
 charset-normalizer==2.0.12
@@ -42,53 +34,50 @@ defusedxml==0.7.1
     # via python3-openid
 django==4.2.7
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   crispy-bootstrap5
     #   django-allauth
     #   django-anvil-consortium-manager
     #   django-dbbackup
     #   django-extensions
     #   django-filter
     #   django-model-utils
-    #   django-redis
     #   django-tables2
 django-allauth==0.54.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-anvil-consortium-manager @ git+https://github.com/UW-GAC/[email protected]
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-autocomplete-light==3.9.4
     # via django-anvil-consortium-manager
 django-crispy-forms==1.14.0
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   crispy-bootstrap5
     #   django-anvil-consortium-manager
 django-dbbackup==4.0.1
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-environ==0.8.1
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-extensions==3.2.3
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   django-anvil-consortium-manager
 django-filter==23.3
     # via django-anvil-consortium-manager
 django-login-required-middleware==0.8.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-maintenance-mode==0.16.3
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-model-utils==4.2.0
-    # via -r requirements.in
-django-redis==5.2.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 django-simple-history==3.4.0
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   django-anvil-consortium-manager
 django-tables2==2.4.1
     # via django-anvil-consortium-manager
 django-tree-queries==0.15.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 fastobo==0.12.2
     # via pronto
 fontawesomefree==6.2.1
@@ -97,18 +86,16 @@ google-auth[requests]==2.14.1
     # via
     #   django-anvil-consortium-manager
     #   google-auth
-hiredis==2.2.3
-    # via -r requirements.in
 idna==3.3
     # via requests
 importlib-metadata==5.2.0
     # via build
 importlib-resources==5.10.0
     # via jsonschema
 jsonschema==4.16.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 mysqlclient==2.1.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 networkx==2.8.8
     # via
     #   django-anvil-consortium-manager
@@ -119,22 +106,20 @@ numpy==1.24.2
     #   pandas
 oauthlib==3.2.2
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   requests-oauthlib
 packaging==21.3
     # via build
 pandas==2.0.3
-    # via -r requirements.in
-pillow==10.1.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 pip-tools==7.3.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 pkgutil-resolve-name==1.3.10
     # via jsonschema
 plotly==5.13.0
     # via django-anvil-consortium-manager
 pronto==2.5.2
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 pyasn1==0.4.8
     # via
     #   pyasn1-modules
@@ -159,23 +144,16 @@ python-dateutil==2.8.2
     #   pronto
 python-fsutil==0.6.1
     # via django-maintenance-mode
-python-slugify==6.1.2
-    # via -r requirements.in
 python3-openid==3.2.0
     # via django-allauth
 pytz==2023.3.post1
     # via
-    #   -r requirements.in
     #   django-anvil-consortium-manager
     #   django-dbbackup
     #   pandas
-redis==4.5.4
-    # via
-    #   -r requirements.in
-    #   django-redis
 requests==2.31.0
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   django-allauth
     #   requests-oauthlib
 requests-oauthlib==1.3.1
@@ -189,14 +167,12 @@ six==1.16.0
     #   python-dateutil
 sqlparse==0.4.4
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   django
 tablib==3.5.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 tenacity==8.2.1
     # via plotly
-text-unidecode==1.3
-    # via python-slugify
 tomli==2.0.1
     # via
     #   build
@@ -208,12 +184,12 @@ tzdata==2023.3
     # via pandas
 urllib3==2.1.0
     # via
-    #   -r requirements.in
+    #   -r requirements/requirements.in
     #   requests
 wheel==0.41.3
     # via pip-tools
 whitenoise==6.6.0
-    # via -r requirements.in
+    # via -r requirements/requirements.in
 zipp==3.10.0
     # via
     #   importlib-metadata

requirements/test-requirements.in

@@ -1,14 +1,20 @@
 -c requirements.txt
 
+# Pytest
 pytest  # https://github.com/pytest-dev/pytest
+# Pytest improvements - progress bar, etc.
 pytest-sugar  # https://github.com/Frozenball/pytest-sugar
-responses  # https://github.com/getsentry/responses - for mocking HTTP responses
+# Mock HTTP responses
+responses  # https://github.com/getsentry/responses
+# Factories to create Django objects.
 factory-boy  # https://github.com/FactoryBoy/factory_boy
+# Django plugin for pytest.
 pytest-django  # https://github.com/pytest-dev/pytest-django
-# For testing migrations
+# Test migrations.
 django-test-migrations
-# For freezing time in tests
+# Freeze time in tests.
 freezegun  # https://github.com/spulec/freezegun
 # Coverage of django templates
 django-coverage-plugin  # https://github.com/nedbat/django_coverage_plugin
+# Test coverage.
 coverage