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Mattbranch#28

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mconomos wants to merge 35 commits intodevelUW-GAC/analysis_pipeline:develfrom mattbranchUW-GAC/analysis_pipeline:mattbranchCopy head branch name to clipboard

+100-24

Commits

Commits on Apr 8, 2020

• add locus name and signif_level options

  mconomos

  committed
  845a392

• put track_file back in

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  841819e

• convert signif_level to numeric

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  61a9450

Commits on Apr 30, 2020

• add option to adjust number of gene rows in locus zoom plots

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  65f7473

• attempting to get command syntax correct

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  f3d4ebd

• wip

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  7189db4

• attempt to add ability to label rsID in locus zoom

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  735c7c2

• make locuszoom title optional

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  77e6dea

• wip

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  a9a2583

Commits on May 6, 2020

• add option to specify the variant and region for plotting

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  ff187d6

Commits on May 7, 2020

• wip

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  8acdab5

• match a couple aesthetics to Oasis

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  7e65d78

• add marker file option

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  bf12997

• add ref snp line

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  3d189b5

• updates to ref snp plotting

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  8f5d462

• wip

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  6ad4e33

Commits on May 8, 2020

• wip

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  6ecabd4

• wip

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  3711014

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  32661d8

• wip

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  8dfe6f2

• update calculateLD to avoid long vector issue; allows for larger data sets

  mconomos

  committed
  66ca30b

• cleanup; add option for NA rsid in locus_file

  mconomos

  committed
  8e039af