Mattbranch

[mconomos]

I added the option to include a locus name in the title of the plot and the filename. This is done by including an optional locus_name column in the locus_file. It seems to work, but one issue with this is that the title can get too long and run off the figure - any ideas on how to address this? (I actually think this was already occasionally an issue).

I also made the significance line a modifiable parameter by adding a signif_level parameter to the config file.

[mconomos]

@smgogarten I've made a lot of commits, so I wanted to sum up what I've changed in the locuszoom plots:

• Made the significance threshold modifiable
• Made it possible to have the plot label the variant with the rsID (rather than chr:pos) by including an "rsid" column in the locus_file
• Made it possible to include a locus name in both the file name and figure title by including a "locus_name" column in the locus_file
• Separated out the code that puts together the figure title; rearranged it a bit
• Made the figure title optional by adding a parameter "title" to the config file that defaults to TRUE
• Made the number of rows allocated for genes at the bottom of the figure modifiable by adding a parameter "gene_rows" to the config file. The locuszoom default is 4.