Fix: GPR curation for miscellaneous isolated drug metabolism

[JHL-452b]

Main improvements in this PR:

As proposed in #876

• Remove ENSG00000180011 from MAR04202;
• Remove ENSG00000115705 from MAR08752;
• Remove ENSG00000184254 from MAR02195;
• Remove ENSG00000184254 from MAR02197;
• Remove ENSG00000184254 from MAR02189;
• Remove ENSG00000168137, ENSG00000243056 from MAR09464;
• Remove ENSG00000141560, ENSG00000172456, ENSG00000162408, ENSG00000116199 from MAR09466;
• Remove ENSG00000116199 from MAR09467;
• Remove ENSG00000133048 from MAR09485;
• Remove ENSG00000198408 from MAR09495;
• Remove ENSG00000221988 from MAR09499;
• Remove ENSG00000213722 from MAR09513;
• Remove ENSG00000150656 from MAR06861;
• Remove ENSG00000197506 from MAR12460;
• Remove ENSG00000197506, ENSG00000156222 from MAR12471;
• Remove ENSG00000168137, ENSG00000198408, ENSG00000213722 and ENSG00000243056 from model as they are not connected to any reactions after this curation.

I hereby confirm that I have:

• Tested my code on my own computer for running the model
• Selected develop as a target branch
• Any removed reactions and metabolites have been moved to the corresponding deprecated identifier lists

[github-actions]

This PR has been automatically tested with GH Actions. Here is the output of the MACAW test:

Starting dead-end test...
 - Found 1514 dead-end metabolites.
 - Found 1319 reactions incapable of sustaining steady-state fluxes in either direction due to these dead-ends.
 - Found 1977 reversible reactions that can only carry steady-state fluxes in a single direction due to dead-ends.
Starting duplicate test...
 - Skipping redox duplicates because no redox_pairs and/or proton_ids were provided.
 - Found 447 reactions that were some type of duplicate:
   - 0 were completely identical to at least one other reaction.
   - 13 involve the same metabolites but go in the opposite direction or have the opposite reversibility as at least one other reaction.
   - 447 involve the same metabolites but with different coefficients as at least one other reaction.

This and a more detailed output from MACAW are also committed to data/macawResults/.

Note: In the case of multiple test runs, this post will be edited.

[feiranl]

LGTM!