adding pycirclize version 1.7.2

README.md

@@ -262,7 +262,7 @@ To learn more about the docker pull rate limits and the open source software pro
 | [Porechop](https://hub.docker.com/r/staphb/porechop/) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/porechop)](https://hub.docker.com/r/staphb/porechop) | <ul><li>0.2.4</li></ul> | https://github.com/rrwick/Porechop |
 | [PPanGGOLiN](https://hub.docker.com/r/staphb/ppanggolin/) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/ppanggolin)](https://hub.docker.com/r/staphb/ppanggolin) | <ul><li>[1.2.105](./ppanggolin/1.2.105/)</li><li>[2.0.3](./ppanggolin/2.0.3/)</li><li>[2.0.5](./ppanggolin/2.0.5/)</li><li>[2.1.2](./ppanggolin/2.1.2/)</li></ul> | https://github.com/labgem/PPanGGOLiN |
 | [Prokka](https://hub.docker.com/r/staphb/prokka/) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/prokka)](https://hub.docker.com/r/staphb/prokka) | <ul><li>1.13.4</li><li>1.14.0</li><li>1.14.5</li><li>1.14.6</li></ul> | https://github.com/tseemann/prokka |
-| [pyCirclize](https://hub.docker.com/r/staphb/pycirclize/) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/pycirclize)](https://hub.docker.com/r/staphb/pycirclize) | <ul><li>[1.0.0](pycirclize/1.0.0/)</li><li>[1.2.0](./pycirclize/1.2.0/)</li><li>[1.5.0](./pycirclize/1.5.0/)</li><li>[1.6.0](./pycirclize/1.6.0/)</li><li>[1.71](./pycirclize/1.7.1/)</li></ul> | https://github.com/moshi4/pyCirclize |
+| [pyCirclize](https://hub.docker.com/r/staphb/pycirclize/) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/pycirclize)](https://hub.docker.com/r/staphb/pycirclize) | <ul><li>[1.0.0](./build-files/pycirclize/1.0.0/)</li><li>[1.2.0](./build-files/pycirclize/1.2.0/)</li><li>[1.5.0](./build-files/pycirclize/1.5.0/)</li><li>[1.6.0](./build-files/pycirclize/1.6.0/)</li><li>[1.7.1](./build-files/pycirclize/1.7.1/)</li><li>[1.7.2](./build-files/pycirclize/1.7.2/)</li></ul> | https://github.com/moshi4/pyCirclize |
 | [pyGenomeViz](https://hub.docker.com/r/staphb/pygenomeviz/) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/pygenomeviz)](https://hub.docker.com/r/staphb/pygenomeviz) | <ul><li>0.2.2</li><li>0.3.2</li><li>[0.4.2](pygenomeviz/0.4.2/)</li><li>[0.4.3](pygenomeviz/0.4.3/)</li><li>[0.4.4](pygenomeviz/0.4.4/)</li><li>[1.1.0](pygenomeviz/1.1.0/)</li><li>[1.5.0](pygenomeviz/1.5.0/)</li></ul> | https://github.com/moshi4/pyGenomeViz |
 | [pyMLST](https://hub.docker.com/r/staphb/pymlst/) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/pymlst)](https://hub.docker.com/r/staphb/pymlst) | <ul><li>[2.1.5](./pymlst/2.1.5/)</li><li>[2.1.6](./pymlst/2.1.6/)</li></ul> | https://github.com/bvalot/pyMLST |
 | [pypolca](https://hub.docker.com/r/staphb/pypolca/) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/pypolca)](https://hub.docker.com/r/staphb/pypolca) | <ul><li>[0.3.1](./pypolca/0.3.1/)</li></ul> | https://github.com/gbouras13/pypolca |

build-files/pycirclize/1.7.2/Dockerfile

@@ -0,0 +1,43 @@
+FROM python:3.9.17-slim AS app
+
+ARG PYCIRCLIZE_VER="1.7.2"
+
+# 'LABEL' instructions tag the image with metadata that might be important to the user
+LABEL base.image="python:3.9.17-slim"
+LABEL dockerfile.version="1"
+LABEL software="pyCirclize"
+LABEL software.version="${PYCIRCLIZE_VER}"
+LABEL description="Circular visualization in Python"
+LABEL website="https://github.com/moshi4/pyCirclize"
+LABEL license="https://github.com/moshi4/pyCirclize/blob/main/LICENSE"
+LABEL maintainer="Erin Young"
+LABEL maintainer.email="[email protected]"
+
+RUN apt-get update && apt-get install -y --no-install-recommends \
+    procps && \
+    apt-get autoclean && rm -rf /var/lib/apt/lists/*
+
+RUN pip install --no-cache pycirclize==${PYCIRCLIZE_VER} -vv
+
+ENV PATH=$PATH \
+    LC_ALL=C
+
+CMD ["pip", "show", "pycirclize"]
+
+WORKDIR /data
+
+FROM app AS test
+
+WORKDIR /test
+
+RUN pip show pycirclize
+
+RUN apt-get update && apt-get install -y --no-install-recommends wget
+
+RUN wget -q https://raw.githubusercontent.com/StaPH-B/docker-builds/master/build-files/pycirclize/1.5.0/tests/example1.py && \
+    wget -q https://raw.githubusercontent.com/StaPH-B/docker-builds/master/build-files/pycirclize/1.5.0/tests/example2.py && \
+    wget -q https://raw.githubusercontent.com/StaPH-B/docker-builds/master/build-files/pycirclize/1.5.0/tests/example3.py
+
+RUN python example1.py && ls example01.png && \
+    python example2.py && ls example02.png && \
+    python example3.py && ls example03.png

build-files/pycirclize/1.7.2/README.md

@@ -0,0 +1,61 @@
+# pyCirclize container
+
+Main tool: [pyCirclize](https://pypi.org/project/pyCirclize/)
+
+Code repository: https://github.com/moshi4/pyCirclize
+
+Basic information on how to use this tool:
+- executable: NA
+- help: NA
+- version: NA
+- description: pyCirclize is a python package for creating visual images of circular genomes (like those of bacteria)
+
+Full documentation: https://pypi.org/project/pyCirclize/
+
+## Example Usage
+
+This is for running containers with a specific python package, and is not really meant to be run from the command line. Instead, a bioinformatician could create a python script that uses pycirclize.
+
+example1.py:
+```python
+from pycirclize import Circos
+import numpy as np
+np.random.seed(0)
+
+# Initialize Circos sectors
+sectors = {"A": 10, "B": 15, "C": 12, "D": 20, "E": 15}
+circos = Circos(sectors, space=5)
+
+for sector in circos.sectors:
+    # Plot sector name
+    sector.text(f"Sector: {sector.name}", r=110, size=15)
+    # Create x positions & random y values
+    x = np.arange(sector.start, sector.end) + 0.5
+    y = np.random.randint(0, 100, len(x))
+    # Plot lines
+    track1 = sector.add_track((80, 100), r_pad_ratio=0.1)
+    track1.xticks_by_interval(interval=1)
+    track1.axis()
+    track1.line(x, y)
+    # Plot points 
+    track2 = sector.add_track((55, 75), r_pad_ratio=0.1)
+    track2.axis()
+    track2.scatter(x, y)
+    # Plot bars
+    track3 = sector.add_track((30, 50), r_pad_ratio=0.1)
+    track3.axis()
+    track3.bar(x, y)
+
+# Plot links 
+circos.link(("A", 0, 3), ("B", 15, 12))
+circos.link(("B", 0, 3), ("C", 7, 11), color="skyblue")
+circos.link(("C", 2, 5), ("E", 15, 12), color="chocolate", direction=1)
+circos.link(("D", 3, 5), ("D", 18, 15), color="lime", ec="black", lw=0.5, hatch="//", direction=2)
+circos.link(("D", 8, 10), ("E", 2, 8), color="violet", ec="red", lw=1.0, ls="dashed")
+
+circos.savefig("example01.png")
+```
+
+```bash
+python example1.py
+```