7.0.1

See the revision history for a list of changes delivered with this release.

Go to the download page to get binaries about the desktop application, the command line workflow tool, and more.

7.0

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Go to the download page to get binaries about the desktop application, the command line workflow tool, and more.

6.0

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5.2

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5.1

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Release 5.0

See the revision history for a list of changes delivered with this release.

Go to the download page to get binaries about the desktop application, the command line workflow tool, and more.

3.0

See here for a list of changes delivered with this release.

Go to the download page to get binaries about the desktop application, the command line workflow tool, and more.

Version 2.1

Distribution Files

• Ondex Desktop
• Ondex Mini (i.e., command line-based workflow engine)
• Other versions here

Release Notes

• Improvements to the OWL/Ondex mappings in the OWL Parser.
• Some bugs fixed with the FASTA-GFF Parser and PUBMED parser.
• Other code base improvements.
• More details here

Version 2.0

Distribution Files

• Ondex Desktop
• Ondex Mini (i.e., command line-based workflow engine)
• Other versions here

Release Notes

• New version for the OWL parser (easier to configure).
• New RDF Exporter, based on the new BK-Onto Ontology.
• RDF is used for populating the Neo4j graph database, using the new Neo4j Exporter.
• More details here

Version 1.2

• OWL parser
  • Minor improvements in parsing GO, TO, FYPO ontologies
  • Options to customise accession prefixes in the final ONDEX graph
• UniProt parser
  • GO terms added from accessions file itself commit
  • obo file parameter excluded commit
• Tabular parser extended with graph-merge options commit