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Rothamsted

Tools and resources from Rothamsted Research

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  1. knetminer knetminer Public

    KnetMiner - webapp to search and visualize genome-scale knowledge graphs

    JavaScript 25 16

  2. knetmaps.js knetmaps.js Public

    KnetMaps: a BioJS component to visualize biological knowledge networks

    JavaScript 10 6

  3. knetbuilder knetbuilder Public

    KnetBuilder data integration platform for building knowledge graphs. Previously known as ondex.

    Java 12 11

  4. rdf2pg rdf2pg Public

    tools to convert/load RDF into Neo4j

    Java 43 10

  5. genelist-api genelist-api Public

    KnetMiner API query tool for list of genes

    Python 1 2

  6. bioknet-onto bioknet-onto Public

    The Bio Knowledge Network, powering knowledge graphs released by the Knetminer project

    XSLT 4

Repositories

Showing 10 of 41 repositories
  • knetminer-backend Public

    The new Knetminer backend, based on graph databases.

    Rothamsted/knetminer-backend’s past year of commit activity
    Java 0 1 0 1 Updated Dec 2, 2024
  • knetminer Public

    KnetMiner - webapp to search and visualize genome-scale knowledge graphs

    Rothamsted/knetminer’s past year of commit activity
    JavaScript 25 MIT 16 54 (1 issue needs help) 4 Updated Dec 2, 2024
  • knetminer-common Public

    Parent POM for Knetminer projects, also containing common files.

    Rothamsted/knetminer-common’s past year of commit activity
    Shell 2 0 0 3 Updated Dec 2, 2024
  • agri-schemas Public

    Development of schemas and ontologies for the agrifood, inspired to schema.org and bioschemas.

    Rothamsted/agri-schemas’s past year of commit activity
    Python 4 1 0 0 Updated Nov 11, 2024
  • rdf2pg Public

    tools to convert/load RDF into Neo4j

    Rothamsted/rdf2pg’s past year of commit activity
    Java 43 LGPL-3.0 10 0 1 Updated Oct 10, 2024
  • graphdb-benchmarks Public

    Application to benchmark Neo4j+Cypher/Virtuoso+SPARQL/ArcadeDB+Gremlin querying

    Rothamsted/graphdb-benchmarks’s past year of commit activity
    Jupyter Notebook 7 4 0 2 Updated Jun 23, 2024
  • knetbuilder Public

    KnetBuilder data integration platform for building knowledge graphs. Previously known as ondex.

    Rothamsted/knetbuilder’s past year of commit activity
    Java 12 MIT 11 6 4 Updated May 29, 2024
  • neo4j-server-maven-plugin Public

    Start and stop any version of Neo4j community server

    Rothamsted/neo4j-server-maven-plugin’s past year of commit activity
    Java 0 Apache-2.0 1 0 1 Updated Dec 5, 2023
  • knetgraphs-gene-traits Public

    Enrichment Analysis Use Cases. Tools to analyse plant biology knowledge graphs and find significant traits and bioprocess from gene expression sets. The project uses data from Knetminer, ENSEMBL, EBI Gene Expression Atlas and others, exported as Knowledge graphs using Agrischemas/Bioschemas annotations.

    Rothamsted/knetgraphs-gene-traits’s past year of commit activity
    Jupyter Notebook 3 AGPL-3.0 0 0 0 Updated Nov 17, 2023
  • knetminer-testing Public

    Material about testing knetminer

    Rothamsted/knetminer-testing’s past year of commit activity
    0 0 0 0 Updated Nov 15, 2023
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