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79 Open 578 Closed
79 Open 578 Closed
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Issues list

ALT coordinate
#685 opened Nov 19, 2024 by uretaj
1
Conda install doesnt work
#684 opened Oct 30, 2024 by amcpherson
Are the docker image GRIDSS2 or GRIDSS version 1?
#682 opened Oct 3, 2024 by lwtan90
What is the exact command to run gridss_somatic_filter?
#680 opened Sep 18, 2024 by lwtan90
Structural Variation Identification Using GRIDSS
#679 opened Sep 18, 2024 by anitha-ravichandran
Illegal seek
#677 opened Sep 9, 2024 by avrajit
2
Running into errors with conda version while docker/singularity work fine
#676 opened Sep 4, 2024 by famosab
2
ERROR::INVALID_ALIGNMENT_START:Record 341, Read name 1-15215340, Mate Alignment start should be 0 because reference name = *
#675 opened Aug 30, 2024 by kuangzhuoran
SoftClipsToSplitReads error: mem: invalid option -- 'K'
#673 opened Aug 23, 2024 by kostasgalexiou
gridss results MERGE problems with other SV recognition software
#672 opened Aug 23, 2024 by HuangYihang1222
3
NullPointerException during CollectGridssMetricsAndExtractSVReads
#671 opened Aug 19, 2024 by vrohnie
Docker img doesnt work
#669 opened Aug 16, 2024 by saphir746
Running Joint Calling
#667 opened Jul 22, 2024 by HenryMarshall97
Clarify --assembly in documentation
#664 opened Jul 10, 2024 by famosab
Error with gridss_somatic_filter
#663 opened Jun 27, 2024 by Teezi
2
Advice needed in regards to the GRIDSS blacklist
#662 opened Jun 21, 2024 by Teezi
error with simple-event-annotation.R script
#656 opened Mar 26, 2024 by shaghayeghsoudi
2
about VIRUSBREAKEND output
#655 opened Mar 12, 2024 by hidehitofukushima
GRIDSS AnnotateInsertedSequence error with ~2.8 million SV events: htsjdk.samtools.util.RuntimeIOException: Stream closed
#646 opened Oct 31, 2023 by scwatts
VIRUSBREAKEND > failure identifying viral sequences
#644 opened Oct 12, 2023 by josh11351
2
singularity, error on creating temp files
#643 opened Oct 7, 2023 by aheravi
virusbreakend docker image issue: BAM index not found
#639 opened Sep 2, 2023 by ugh-astya
Disable pdf creation/running R scripts at preprocess step
#638 opened Aug 30, 2023 by pruzanov
Error when running gridss_somatic_filter
#635 opened Jul 24, 2023 by kcleal
8
VirusBreakend Running Error
#633 opened Jun 26, 2023 by DAWNkKim
ProTip! Exclude everything labeled bug with -label:bug.