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ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis.

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c9cfcac · Sep 14, 2016

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ChIPKernels

ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis. A dictionary of the desired kernel must be built and this dictionary can be used for determining kernels for DNA Sequences. This package has been tested with R 3.2

The following representations are supported.

  1. Mismatch/Dimismatch kernel: build.mismatch.dictionary
  2. Positional wildcard kernel: build.wildcard.dictionary

After the dictionary is built, use the build.features.kernels function to determine the feature matrix and kernel for DNA Sequences.

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ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis.

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