Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Refactor readers xi #256

Open
wants to merge 19 commits into
base: refactor_readers_X
Choose a base branch
from
Open

Refactor readers xi #256

wants to merge 19 commits into from

Commits on Nov 22, 2024

  1. introduce MaxQuantLikeReader

    @mschwoer
    mschwoer committed Nov 22, 2024
    Configuration menu
    Copy the full SHA
    4c930cf View commit details
    Browse the repository at this point in the history

  2. add missing commit

    @mschwoer
    mschwoer committed Nov 22, 2024
    Configuration menu
    Copy the full SHA
    9da0c2c View commit details
    Browse the repository at this point in the history

  3. move sage reader transform_table to post-processing

    @mschwoer
    mschwoer committed Nov 22, 2024
    Configuration menu
    Copy the full SHA
    67044e8 View commit details
    Browse the repository at this point in the history

  4. add some docstrings

    @mschwoer
    mschwoer committed Nov 22, 2024
    Configuration menu
    Copy the full SHA
    4dd79c7 View commit details
    Browse the repository at this point in the history

  5. some simplifications

    @mschwoer
    mschwoer committed Nov 22, 2024
    Configuration menu
    Copy the full SHA
    a83d1fc View commit details
    Browse the repository at this point in the history

  6. rename to ModifiedSequenceReader

    @mschwoer
    mschwoer committed Nov 22, 2024
    Configuration menu
    Copy the full SHA
    a394d59 View commit details
    Browse the repository at this point in the history

  7. rename MSFraggerPepXML

    @mschwoer
    mschwoer committed Nov 22, 2024
    Configuration menu
    Copy the full SHA
    bdaae64 View commit details
    Browse the repository at this point in the history

  8. change df access

    @mschwoer
    mschwoer committed Nov 22, 2024
    Configuration menu
    Copy the full SHA
    3df2c78 View commit details
    Browse the repository at this point in the history

  9. re-add origin_df parameter to post_process for backwards compatibility

    @mschwoer
    mschwoer committed Nov 22, 2024
    Configuration menu
    Copy the full SHA
    e2e0399 View commit details
    Browse the repository at this point in the history

Commits on Nov 25, 2024

  1. drop hardcoded "EG.PrecursorId"

    @mschwoer
    mschwoer committed Nov 25, 2024
    Configuration menu
    Copy the full SHA
    14e426a View commit details
    Browse the repository at this point in the history

  2. refactor test_data_downloader.py to not depend on progressbar

    @mschwoer
    mschwoer committed Nov 25, 2024
    Configuration menu
    Copy the full SHA
    1a064a9 View commit details
    Browse the repository at this point in the history

  3. add new integration tests for psm reader

    @mschwoer
    mschwoer committed Nov 25, 2024
    Configuration menu
    Copy the full SHA
    2a14b38 View commit details
    Browse the repository at this point in the history

  4. rename test_data_downloader.py

    @mschwoer
    mschwoer committed Nov 25, 2024
    Configuration menu
    Copy the full SHA
    42dc4c2 View commit details
    Browse the repository at this point in the history

  5. rename test_data_downloader.py

    @mschwoer
    mschwoer committed Nov 25, 2024
    Configuration menu
    Copy the full SHA
    7caf84c View commit details
    Browse the repository at this point in the history

  6. fix tests

    @mschwoer
    mschwoer committed Nov 25, 2024
    Configuration menu
    Copy the full SHA
    7e6ec91 View commit details
    Browse the repository at this point in the history

Commits on Nov 26, 2024

  1. debug tests

    @mschwoer
    mschwoer committed Nov 26, 2024
    Configuration menu
    Copy the full SHA
    ea72da3 View commit details
    Browse the repository at this point in the history

  2. fix tests

    @mschwoer
    mschwoer committed Nov 26, 2024
    Configuration menu
    Copy the full SHA
    2b0cf3d View commit details
    Browse the repository at this point in the history

  3. Revert "debug tests" 

    This reverts commit ea72da3.
    @mschwoer
    mschwoer committed Nov 26, 2024
    Configuration menu
    Copy the full SHA
    1540dba View commit details
    Browse the repository at this point in the history

  4. fix tests

    @mschwoer
    mschwoer committed Nov 26, 2024
    Configuration menu
    Copy the full SHA
    0f75ebb View commit details
    Browse the repository at this point in the history