more stable yeo johnson roundtrips #573
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - 'v*' | |
| pull_request: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| FORCE_COLOR: 1 | |
| jobs: | |
| test: | |
| name: py${{ matrix.python-version }} ${{ matrix.os }} ${{ matrix.env }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.9", "3.11", "3.12"] | |
| env: [""] | |
| include: | |
| - env: "min-all-deps" | |
| python-version: "3.9" | |
| os: "ubuntu-latest" | |
| - env: "" | |
| python-version: "3.12" | |
| os: "macos-latest" | |
| - env: "" | |
| python-version: "3.12" | |
| os: "windows-latest" | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Set environment variables | |
| run: | | |
| if [[ "${{ matrix.env }}" == "" ]]; then | |
| echo "CONDA_ENV_FILE=environment.yml" >> $GITHUB_ENV | |
| else | |
| echo "CONDA_ENV_FILE=ci/requirements/${{ matrix.env }}.yml" >> $GITHUB_ENV | |
| fi | |
| - name: Create conda environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: mesmer-tests | |
| cache-downloads: true | |
| cache-downloads-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{ env.CONDA_ENV_FILE }}" | |
| micromamba-version: 'latest' | |
| environment-file: ${{ env.CONDA_ENV_FILE }} | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Install mesmer | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Test installation | |
| run: python scripts/test_install.py | |
| - name: Run tests | |
| run: python -u -m pytest | |
| -r a -v | |
| --all | |
| --cov=mesmer | |
| --cov-report=xml | |
| - name: Upload code coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| env_vars: RUNNER_OS,PYTHON_VERSION | |
| name: codecov-umbrella | |
| fail_ci_if_error: false |