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dn-ds-using-fracminhash

Calculate dn/ds ratio, which is the ratio of nonsynonymous mutations to synonymous mutations, using FracMinHash sketches.

All mathematical calculations are performed here: https://www.dropbox.com/s/gbw4unbs4ewz7e9/DnDs.nb?dl=0 by David.

Installation

conda create -y --name dnds
conda install -y --name dnds -c conda-forge -c bioconda --file requirements.txt
conda activate dnds

Running

To run, simply invoke the test_script.py script. Other scripts are supporting scripts.

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