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@KoslickiLab

KoslickiLab

Welcome to the Koslicki lab 👋👋

The Koslicki lab focuses on computational biology. We are interested in developing efficient, mathematically sound approaches to extract insight from omics data. This puts our research squarely at the intersection of biology, mathematics, and computer science. We are particularly interested in the entire arc of developing computational biology methods: rigorous mathematical justification of a method, implementing the method into a tool usable by the community, applying the tool to pressing scientific problems, and finally using the results to inform further development of computational techniques.

Resources

  1. Contents in the shared_folder on the servers (KEGG, GTDB, etc.)
  2. Koslicki Lab Google Drive (requires Dr. Koslicki adding you to it)
  3. Print posters at PSU

Thesis Q&A

Thesis information: Let's share resources/questions/tips here for reference

Commencement information

Pinned Loading

  1. useful_tools useful_tools Public

    Lab forum to share scripts, software, and technical issues

    Shell 2

  2. .github .github Public

    Public profile

  3. Koslicki-lab-PSU Koslicki-lab-PSU Public

    Website for Koslicki Lab.

    HTML 3

Repositories

Showing 10 of 50 repositories
  • YACHT Public

    A mathematically characterized hypothesis test for organism presence/absence in a metagenome

    KoslickiLab/YACHT’s past year of commit activity
    C++ 30 MIT 8 10 2 Updated Nov 26, 2024
  • DnDs-visualization Public

    A repo for the larger scale DnDs project, along with the visualization code

    KoslickiLab/DnDs-visualization’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 26, 2024
  • afsampling Public

    Investigating cardinality of sketch sizes when sketching is done using affirmative sampling

    KoslickiLab/afsampling’s past year of commit activity
    C++ 0 1 0 0 Updated Nov 12, 2024
  • KoslickiLab/KG2_SpanningTree_Analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 12, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    KoslickiLab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,309 0 0 Updated Nov 6, 2024
  • KoslickiLab/prokrustean’s past year of commit activity
    C++ 3 GPL-3.0 0 1 0 Updated Nov 5, 2024
  • KoslickiLab/branch-lengths-assignment’s past year of commit activity
    Python 0 0 0 0 Updated Nov 5, 2024
  • frac-kmc Public

    Fast FracMinHash sketch generator

    KoslickiLab/frac-kmc’s past year of commit activity
    C++ 1 1 0 0 Updated Nov 3, 2024
  • fast_yacht_train Public

    This repository implements a faster version of yacht train

    KoslickiLab/fast_yacht_train’s past year of commit activity
    C++ 0 1 0 0 Updated Nov 2, 2024
  • DrugBankNER Public

    ETL of DrugBank to recognize KG2 concepts in DrugBank entries for use as training data

    KoslickiLab/DrugBankNER’s past year of commit activity
    Python 1 1 0 0 Updated Oct 29, 2024

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