load10XCoords VisiumHD support #38
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…nd transfoming the SpaceMarkersMetric with log2(abs()+1) to prevent skewing of the scale.Updated Package version.
…ders the spatial pattern itself in calculating influence instead of only considering the spots around it
…ders the spatial pattern itself in calculating influence instead of only considering the spots around it. Updated default kernelthreshold to be slightly more stringent since more hotspots will be produced. Updated Package version
…ecify sigma for kernel width for smoothing and outlier threshold for hotspots. The default behavior is to pull the spot diameter from a 10xVisium .json file from the usual spatial folder created by Visium.Updated version number
…HD which are stored in .parquet files. Added the nanoparquet function to depends in DESCRIPTION as well as updated package version. Added spatialDir to an argument in load10XCoords since VisiumHD typically has a separate folders for each of the resolutions each with their own spatial folder.
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Updated load10XCoords to be able to read tissue positions from VisiumHD which are stored in .parquet files. Added the nanoparquet function to depends in DESCRIPTION as well as updated package version. Added spatialDir to an argument in load10XCoords since VisiumHD typically has a separate folders for each of the resolutions each with their own spatial folder.