Deshpande Lab
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SpaceMarkers
SpaceMarkers PublicAn R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.
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SpaceMarkers-paper
SpaceMarkers-paper PublicScripts used for data analaysis in the manuscript
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SINGE
SINGE PublicForked from gitter-lab/SINGE
Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data
MATLAB
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btc-scrna-pipeline
btc-scrna-pipeline PublicForked from break-through-cancer/btc-scrna-pipeline
A Nextflow pipeline for single-cell RNA-Seq dataset
Nextflow
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btc-sc-containers
btc-sc-containers PublicForked from WangLab-ComputationalBiology/btc-sc-containers
A repository containing all Dockerfile related to the single-cell pipeline
Dockerfile
Repositories
- SpaceMarkers Public
An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.
DeshpandeLab/SpaceMarkers’s past year of commit activity - data-and-scripts Public
DeshpandeLab/data-and-scripts’s past year of commit activity - webatlas-pipeline Public Forked from haniffalab/webatlas-pipeline
A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
DeshpandeLab/webatlas-pipeline’s past year of commit activity - SINGE Public Forked from gitter-lab/SINGE
Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data
DeshpandeLab/SINGE’s past year of commit activity - btc-spatial-pipelines Public Forked from break-through-cancer/btc-spatial-pipelines
Nextflow spatial pipelines (for Spatial Transcriptomics, IMC, etc.)
DeshpandeLab/btc-spatial-pipelines’s past year of commit activity - configs Public Forked from nf-core/configs
Config files used to define parameters specific to compute environments at different Institutions
DeshpandeLab/configs’s past year of commit activity
