Skip to content

Pull requests: DerrickWood/kraken2

New pull request New
19 Open 35 Closed
19 Open 35 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Parallel manifest.txt file download for rsync_from_ncbi.pl
#890 opened Nov 20, 2024 by jonathancosme Loading…
9
fix: exclude ambiguous bases from confidence scoring calculation
#879 opened Sep 11, 2024 by mcolpus Loading…
1
implement @togop's fix for Rsync error: issue 518
#850 opened Jul 4, 2024 by xonq Loading…
Interleaved Fastq input
#843 opened Jun 21, 2024 by WEClarke Loading…
add more deps to makefile
#783 opened Dec 16, 2023 by jchorl Loading…
Fix issue with Silva having domain and superkingdom taxonomic ranks both converted to superkingdom (D) in Kraken
#745 opened Jul 31, 2023 by Thomas-Bcp Loading…
Check existence output folder prior to running kraken2
#718 opened May 9, 2023 by TheOafidian Loading…
1
fixed library & taxonomy download functions and added multiprocessing to speed up downloads
#698 opened Mar 12, 2023 by eladc Loading…
Updated kraken2-build to allow symlinks in the library directory
#603 opened Jun 20, 2022 by oracle5th Loading…
Add batch-size option
#586 opened May 11, 2022 by nrhorner Loading…
Use HTTPS instead for plasmids, update path
#529 opened Nov 9, 2021 by thomcuddihy Loading…
1
Skip hash table size estimation if already done
#450 opened May 16, 2021 by kim-fehl Loading…
Added genbank support
#418 opened Feb 24, 2021 by d-cameron Loading…
4
Refresh FTP connection for downloading libraries with --use-ftp
#406 opened Jan 26, 2021 by tokarevvasily Loading…
Fix link issue with cmake
#386 opened Dec 25, 2020 by starling13 Loading…
2
Add --priority-taxids option for database building.
#256 opened May 21, 2020 by yesimon Loading…
Use wget to handle downloading using proxies
#190 opened Dec 17, 2019 by ghost Loading…
Prefix auxiliary executables with kraken2_
#91 opened Mar 4, 2019 by yesimon Loading…
Suggestion: parallelize low complexity masking
#39 opened Aug 11, 2018 by tskir Loading…
1
ProTip! What’s not been updated in a month: updated:<2024-11-26.