Refresh FTP connection for downloading libraries with --use-ftp
#406
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
I had issues with downloading genomes for viral library. I have noticed that it could download only first 92 genomes from manifest.txt. I am fairly certain that it is something NCBI implemented intentionally (or maybe not).
I have made changes to rsync_from_ncbi.pl to refresh FTP connection if genome is not downloaded on the first attempt, otherwise it gives a warning.