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Authorize to GAR in init scripts #4782

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merged 11 commits into from
Oct 2, 2024
Merged

Authorize to GAR in init scripts #4782

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8628335
Authorize to GAR in init scripts
lucymcnatt Sep 10, 2024
94859a7
use gcloud command
lucymcnatt Sep 10, 2024
7042162
Merge branch 'develop' into IA-4518-gcr-gar
lucymcnatt Sep 10, 2024
220f84f
udpating documentation
lucymcnatt Sep 11, 2024
d20f10a
Merge branch 'IA-4518-gcr-gar' of https://github.com/DataBiosphere/le…
lucymcnatt Sep 11, 2024
9da00ac
configure docker with location
lucymcnatt Sep 11, 2024
1bd5dd7
us.gcr.io is public, gcr.io is private
lucymcnatt Sep 19, 2024
2ef35a4
Merge branch 'develop' into IA-4518-gcr-gar
lucymcnatt Sep 23, 2024
af856a4
merge conflicts
lucymcnatt Sep 23, 2024
f74d2d1
if docker pull fails, use cryptopants docker compose
lucymcnatt Sep 26, 2024
87ddd6c
revert change
lucymcnatt Sep 27, 2024
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9 changes: 5 additions & 4 deletions http/src/main/resources/init-resources/gce-init.sh
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Expand Up @@ -150,12 +150,13 @@ else
fi

if grep -qF "gcr.io" <<< "${JUPYTER_DOCKER_IMAGE}${RSTUDIO_DOCKER_IMAGE}${PROXY_DOCKER_IMAGE}${WELDER_DOCKER_IMAGE}" ; then
log 'Authorizing GCR...'
DOCKER_COMPOSE="docker run --rm -v /var/run/docker.sock:/var/run/docker.sock -v /var:/var -w=/var cryptopants/docker-compose-gcr"
else
DOCKER_COMPOSE="docker run --rm -v /var/run/docker.sock:/var/run/docker.sock -v /var:/var docker/compose:1.29.2"
log 'Authorizing GAR...'
$GCLOUD_CMD auth configure-docker
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fi

DOCKER_COMPOSE="docker run --rm -v /var/run/docker.sock:/var/run/docker.sock -v /var:/var docker/compose:1.29.2"


function apply_user_script() {
local CONTAINER_NAME=$1
local TARGET_DIR=$2
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5 changes: 3 additions & 2 deletions http/src/main/resources/init-resources/init-actions.sh
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Expand Up @@ -294,10 +294,11 @@ END
fi
fi

# If any image is hosted in a GCR registry (detected by regex) then
# If any image is hosted in a GAR registry (detected by regex) then
# authorize docker to interact with gcr.io.
# NOTE: GCR images are now hosted on GAR, but the file paths haven't changed, they automatically redirect.
if grep -qF "gcr.io" <<< "${JUPYTER_DOCKER_IMAGE}${RSTUDIO_DOCKER_IMAGE}${PROXY_DOCKER_IMAGE}${WELDER_DOCKER_IMAGE}" ; then
log 'Authorizing GCR...'
log 'Authorizing GAR...'
gcloud auth configure-docker
fi

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3 changes: 1 addition & 2 deletions jenkins/gce-custom-images/prepare_gce_image.sh
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Expand Up @@ -31,14 +31,13 @@ terra_jupyter_aou_old="us.gcr.io/broad-dsp-gcr-public/terra-jupyter-aou:2.2.7"
cos_gpu_installer="gcr.io/cos-cloud/cos-gpu-installer:v2.1.9"
google_cloud_toolbox="us.gcr.io/cos-cloud/toolbox:v20230714"
docker_composer="docker/compose:1.29.2"
docker_composer_with_auth="cryptopants/docker-compose-gcr"
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# If you change this you must also change Leo reference.conf!
cryptomining_detector="us.gcr.io/broad-dsp-gcr-public/cryptomining-detector:0.0.2"

# This array determines which of the above images are baked into the custom image
# the entry must match the var name above, which must correspond to a valid docker URI
docker_image_var_names="welder_server terra_jupyter_python terra_jupyter_r terra_jupyter_bioconductor terra_jupyter_gatk terra_jupyter_aou terra_jupyter_aou_old openidc_proxy anvil_rstudio_bioconductor cryptomining_detector cos_gpu_installer google_cloud_toolbox docker_composer docker_composer_with_auth"
docker_image_var_names="welder_server terra_jupyter_python terra_jupyter_r terra_jupyter_bioconductor terra_jupyter_gatk terra_jupyter_aou terra_jupyter_aou_old openidc_proxy anvil_rstudio_bioconductor cryptomining_detector cos_gpu_installer google_cloud_toolbox docker_composer"

#
# Functions
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