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29 Open 26 Closed
29 Open 26 Closed
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Issues list

FileNotFoundError: [Errno 2] No such file or directory: 'test_metaG_ViWrap_out/00_VIBRANT_VirSorter_test_metaG/VirSorter_test_metaG/CheckV_result/quality_summary.tsv'
#58 opened Dec 25, 2024 by Cczyf
FileNotFoundError: [Errno 2] No such file or directory: 'ViWrap_test/ViWrap_output/02_vRhyme_outdir/vRhyme_best_bins_fasta_CheckV_result/CheckV_quality_summary.txt'
#56 opened Dec 4, 2024 by Zoeyk9
3
I cant download GB GTDB-Tk db
#55 opened Nov 30, 2024 by ewars
samtools
#54 opened Nov 23, 2024 by Kkoujin
Problems analyzing multiple samples
#53 opened Nov 1, 2024 by lihy-xx
1
VS2 issue
#52 opened Sep 20, 2024 by drob2727
4
custom_MAGs
#50 opened Sep 12, 2024 by Charles-Lou
Sklearn issue?
#49 opened Sep 8, 2024 by drob2727
download all the necessary databases, package them together, and then provide a unified download link
#48 opened Sep 4, 2024 by tynot
3
Is it possible to run the entire pipeline w/out paired reads ?
#46 opened Jul 8, 2024 by eechase
vRhyme is unable to make bins
#44 opened May 23, 2024 by aritrarc15
1
code issues about master_run.py
#42 opened Apr 29, 2024 by beaPhD
FileNotFoundError: [Errno 2] No such file or directory: *.phages_lytic.fna
#40 opened Mar 29, 2024 by clementcoclet
FileNotFoundError: [Errno 2] No such file or directory: 'Host_prediction_to_genome_m90.csv'
#37 opened Mar 6, 2024 by CynthiaChibani
2
FileNotFoundError: [Errno 2] No such file or directory: '/home/user/ViWrap_conda_environments/example_datatest_metaG_ViWrap_out5/02_vRhyme_outdir/vRhyme_best_bins_fasta_CheckV_result/CheckV_quality_summary.txt'
#36 opened Feb 26, 2024 by MAXzbh
2
CheckV error
#35 opened Feb 21, 2024 by tenguzame
3
Nanopore reads, no input files detected
#34 opened Feb 6, 2024 by jonbakerlab
result issues
#33 opened Feb 1, 2024 by AndAvia
FileNotFoundError: [Errno 2] No such file or directory: '/lustre/isaac/proj/UTK0002/PALAVAS/PALAVAS_ViWrap/00_VIBRANT_VirSorter_PHYCOVIR_MEGAVIROME.contigs/VirSorter_PHYCOVIR_MEGAVIROME.contigs/pass/final-viral-score.tsv'
#30 opened Jan 14, 2024 by eechase
4
Databases manually setup & Virus identification tools
#28 opened Jan 5, 2024 by Jiulong-Zhao
1
FileNotFoundError: [Errno 2] No such file or directory: '/data4/machuang/test1/ViWrap_outdir/00_VIBRANT_test_metaG/VIBRANT_phages_test_metaG/test_metaG.phages_lytic.fna'
#26 opened Nov 23, 2023 by AndAvia
3
syntax error in master_run.py
#24 opened Nov 8, 2023 by nitishnih
1
ViWrap-DVF conda env path is not present!
#16 opened Jun 16, 2023 by Timmywang1
1
FileNotFoundError ViWrap_out/02_vRhyme_outdir/vRhyme_best_bins_fasta_CheckV_result/CheckV_quality_summary.txt'
#15 opened Jun 12, 2023 by Sidduppal
2
Error: ConnectionError: could not open index file /path/to/dir/reads_R1.fastq.gz.fxi
#12 opened Mar 12, 2023 by SharonLab
1
ProTip! Adding no:label will show everything without a label.