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Missing one input gene into Prerank module #270

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wgsim opened this issue Jul 12, 2024 · 1 comment
Open

Missing one input gene into Prerank module #270

wgsim opened this issue Jul 12, 2024 · 1 comment

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@wgsim
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wgsim commented Jul 12, 2024

GSEApy version: 1.1.4
Python version: 3.10.14
OS: MacOS, Conda - Osx 64

Thank you for developing a nice tool.
I wanna ask you to check the GSEApy version 1.1.4 prerank module.
When I try to analyze my input gene list by prerank module, it seems to be working well.
However, I found that the length of RES values is one less than my input gene list and it makes I cannot plot the graph. (it returns an error).
I tried to check the old version (1.0.4), and its length of RES values is the same as my input gene list and it works well in graphing.
Please check the prerank module of version 1.1.4.
Thanks!

@zqfang
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zqfang commented Jul 23, 2024

Would you mind sharing me your input ranking list for debugging ? Thanks.

if you input ranking list contains NA or duplciated gene names, the prerank module will reduce the ranking list length.

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