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Missnamed "read" as "forward" in single-end mode
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Same mistake as here: #2
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zhxiaokang authored Jan 9, 2020
1 parent c63d46e commit dae6bdc
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion workflow/align_count_genome.rules
Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@ if end == "pair":
else:
rule getReads:
output:
forward = temp(intermediate_path + "/reads/{sample}.fastq.gz")
read = temp(intermediate_path + "/reads/{sample}.fastq.gz")
params:
key = key,
input_path = input_path
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