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fix: classify mature mirnas#146

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deliaBlue wants to merge 55 commits intodevzavolanlab/mirflowz:devfrom 143-fix-classify-correctly-mature-mirnazavolanlab/mirflowz:143-fix-classify-correctly-mature-mirnaCopy head branch name to clipboard

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Commits on Dec 22, 2023

• docs: expand workflow description

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Commits on Dec 24, 2023

• docs: expand rule descriptions

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Commits on Jan 2, 2024

• Merge branch 'dev' into 126-docs-describe-workflow-rationale

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Commits on Jan 5, 2024

• docs: fix typos

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Commits on Jan 29, 2024

• Merge branch 'dev' into 126-docs-describe-workflow-rationale

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• docs: update rules

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Commits on Jan 30, 2024

• docs: update rules

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• Merge branch 'dev' into 126-docs-describe-workflow-rationale

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• fix: set correct wildcard

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Commits on Jan 31, 2024

• docs: complete rules improvement

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Commits on Feb 23, 2024

• revert: undo refactoring

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• Merge branch 'dev' into 126-docs-describe-workflow-rationale

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Commits on Mar 18, 2024

• Merge branch 'dev' into 126-docs-describe-workflow-rationale

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Commits on May 7, 2024

• docs: update main README

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• docs: update pipeline documentation

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Commits on May 15, 2024

• refactor: correct shift assessment

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Commits on May 24, 2024

• docs: update pipeline documentation

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• docs: update README

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Commits on Jun 10, 2024

• fix typos2

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Commits on Jun 17, 2024

• docs: extend workflow description

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Commits on Jul 28, 2024

• refactor: account for new notation

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Commits on Jul 31, 2024

• Merge branch 'dev' into 126-docs-describe-workflow-rationale

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• Merge branch 'dev' into 126-docs-describe-workflow-rationale

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• Merge branch '126-docs-describe-workflow-rationale' of github.com:zavolanlab/mirflowz into 126-docs-describe-workflow-rationale

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• merge dev branch

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Commits on Aug 17, 2024

• docs: complete documentation

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• docs: complete documentation

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• refactor: adapt script to new name format

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• refactor: add read seq to isomiR tag

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• test: update unit test files

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• test: update unit tests

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• Merge branch '126-docs-describe-workflow-rationale' into 143-fix-classify-correctly-mature-mirna

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• ci: update expected output

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• docs: update isomiR name format

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• docs: update isomiR name format

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Commits on Aug 18, 2024

• test: adjust for new isomir name format

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• test: adjust for isomir new name format

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• revert: undo documetation branch merge

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• revert: undo documentation branch merge

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• ci: fix static code analysis

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• ci: fix static code analysis

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• ci: fix static code analysis

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• ci: fix static code analysis

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Commits on Aug 19, 2024

• Merge branch 'dev' into 143-fix-classify-correctly-mature-mirna

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• docs: add new isomiR notation

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• docs: add new isomiR notation

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Commits on Aug 31, 2024

• Merge branch 'dev' into 143-fix-classify-correctly-mature-mirna

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• Merge branch '143-fix-classify-correctly-mature-mirna' of github.com:zavolanlab/mirflowz into 143-fix-classify-correctly-mature-mirna

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• test: remove duplicated file

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Commits on Jan 12, 2025

• refactor: add CLI argument

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• refactor: modify tests

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• refactor: generalise script and add CLI

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• ci: upgrade miniconda to v3

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• ci: pin ubuntu version

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• ci: set strict channel priority to true

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