Code

fix: infer library type relationship#157

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balajtimate merged 15 commits intodevzavolanlab/htsinfer:devfrom fix_sra_mateszavolanlab/htsinfer:fix_sra_matesCopy head branch name to clipboardJan 21, 2024

+220-66

Commits

Commits on Dec 13, 2023

• refactor: compare alignments between mapped reads only

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  04fcab2

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Commits on Jan 3, 2024

• fix: update get lib type test

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  455e983

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• refactor: helper function for getlibtype

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  806420d

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Commits on Jan 4, 2024

• feat: only map when lib source is inferred

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  782971a

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Commits on Jan 5, 2024

• update tests

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  28284de

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• fix orientation tests

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  dae137d

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• fix orientation tests

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  bf7bea1

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• refactor scripts

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  5f8f62d

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Commits on Jan 8, 2024

• update get lib type and get read orient

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  1e992e1

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• refactor get lib type

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  3fbaceb

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• refactor: update get lib type and tests

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  70f4252

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Commits on Jan 15, 2024

• refactor: update lib type and orientation

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  b5b80ca

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Commits on Jan 17, 2024

• refactor: update concordant read counting, mapping

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  31af8ec

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• update debug messages

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  b908930

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Commits on Jan 18, 2024

• update comments in mapping

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