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useful_scripts

Rrepository of useful commands and scripts.

fastq_sampler: a script to downsample fastq files using shell commands: paste, awk and tr

python_funs.py: 1) mutseq: mutate fastq sequence; 2) generate a random sequence; 3) generate reverse complement of a sequence

extract_softclipped_seq.py: a script to extract softclipped part of a read

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