Scripts and customized scripts used in this paper
Requirements:
- python 3.0+
- R
nucmer_to_inversion.sh: shell script to run NUCmer comparison and output inverted regions
crude_search_inversion.py: from individual mapping blocks to the identification of reliable inverted genome regions
inversion_idx.py: calculate inversion index
genometricorr.r: R script to run GenometriCorr package
tools.r: R scripts to parse GenometriCorr result