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1. BrentLab/Dual_Threshold_Optimization BrentLab/Dual_Threshold_Optimization Public

   Dual Threshold Optimization compares two ranked lists of features (e.g. genes) to determine the rank threshold for each list that minimizes the hypergeometric p-value of the overlap of features. It…

   Rust 4 1

2. BrentLab/NetProphet_2.0 BrentLab/NetProphet_2.0 Public

   A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.

   R 13 5

3. BrentLab/TFPertRespExplainer BrentLab/TFPertRespExplainer Public

   Predict genes' response to perturbations and explains which genomic factors determine the response predictions.

   Jupyter Notebook 2 1

4. TF_Network_Evaluation TF_Network_Evaluation Public

   Evaluate the performance of network inference output against benchmark datasets

   Python

5. HTCF_wiki HTCF_wiki Public

   This is a wiki for new HTCF users.

   3