README.md

GutMeta_analysis_scripts

Offline version of analysis scripts of GutMeta.

GutMeta A one-stop web server of human gut whole-genome shotgun metagenomics profiling data

• Version: 1.0.0
• Authors:
  • Yiqi Jiang
  • Lijia Che
• Maintainers:
  • Yiqi Jiang [email protected]

WARNING: the pipeline is still in development and could change substantially without warning!

Dependencies

Python

• numpy
• pandas
• math
• subprocess
• os
• collections
• scipy
• shutil
• sys
• chardet
• getopt

R

• ape
• dplyr
• ecodist
• getopt
• GUniFrac
• ica
• pROC
• randomForest
• reshape2
• Rtsne
• uwot
• vegan

Version notes

2022-07-18 init version.