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1. PStrain PStrain Public

   Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for…

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2. RGC_analysis RGC_analysis Public

   Simulate the microbiome sample based on the RGC genomes

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3. Bacteria-assembly Bacteria-assembly Public

   Fast reference-based assembly using isolate sequencing data

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4. Bacteria-Variant Bacteria-Variant Public

   Identify variants (snv, indel, sv) by mapping reads onto the reference.

5. bioconda-recipes bioconda-recipes Public

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   Conda recipes for the bioconda channel.

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6. GutMeta_analysis_scripts GutMeta_analysis_scripts Public

   Forked from deepomicslab/GutMeta_analysis_scripts

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