Adding netcdf to install script for Linux

wkumler · Nov 30, 2023 · 8adbe5a · 8adbe5a
1 parent e3a033d
commit 8adbe5a
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/.github/workflows/r-check-cran.yml b/.github/workflows/r-check-cran.yml
@@ -62,6 +62,9 @@ jobs:
           do
             eval sudo $cmd
           done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
+          ## Force-install netcdf since it's missed by the system requirements
+          ## but required for mzR & MSnbase
+          apt-get install -y libnetcdf-dev
 
       - name: Install BiocManager
         run: |
@@ -71,6 +74,7 @@ jobs:
       - name: Install dependencies
         run: |
           install.packages("stringi")
+          BiocManager::install("ncdf4")
           BiocManager::install("mzR")
           remotes::install_deps(dependencies = TRUE, repos=BiocManager::repositories())
           remotes::install_cran("rcmdcheck")