genotyping_by_haplotype

using methylation haplotype to infer CNV genotype

利用下面脚本推测目标区域CNV的基因型

genotype_by_target.py

程序用法

python genotype_by_target.py target.config

target.config文件

该文件是json格式，例子文件参照config/target.config { "raw_hap_plus":"", "raw_hap_minus":"", "villus_input":"", "pregnant_plasma_input":"", "villus_sample":"", "pregnant_plasma_sample":"", "output":"", "target_hapid":"" }